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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Blog Posts
Using pandas isin() method with python holidays package
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When working with a pandas time series, it is useful to know which dates in the time series are public holidays. This information may be used for data analysis, feature construction, improving models, etc.
Installing PyNE on Windows via WSL
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Although PyNE is officially only supported for Linux and Mac, it is possible to build and use it on Windows using the Windows Subsystem for Linux (WSL) and the Ubuntu terminal app from the Microsoft Store. These instructions describe how to install a basic PyNE build (no MOAB, DAGMC or OpenMC interfaces) on Windows via WSL. They presume only some basic knowledge on using Linux and Windows command lines. They were written for Windows 10 (1909), Ubuntu 20.04 and PyNE 0.7.3 - mileage for other releases may vary.
Interactive rebase to switch base branches mid GitHub pull request
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A situation occurred the other week that I had not encountered before when working on a GitHub pull request for the PyNE Python package. The PR (#1270) added a new function to initialize materials by supplying activities of radionuclides. It complements existing methods to create materials from masses or atom fractions.
Updating the version of a port on MacPorts
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If you come across a piece of software on MacPorts with an out of date version, here are instructions for how to update it. First open up a terminal window and identify the port’s maintainer:
Converting a scanned TIFF document to PDF and creating text searchable PDFs
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You can follow these steps to create a text searchable PDF document if your scanner only outputs TIFF files. If your scanner creates PDF files but doesn’t perform OCR to make text searchable, skip to the last step.
Removing pesky PDF title pages and other PDF tricks
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Taking out pages from PDF files, binding PDFs together, and removing PDF security. Here are a couple of free programmes to perform these tasks.
projects
publications
Identification of structure in condensed matter with the topological cluster classification
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Investigating isomorphs with the topological cluster classification
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Novel kinetic trapping in charged colloidal clusters due to self-induced surface charge organization
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Lifetimes and lengthscales of structural motifs in a model glass-former
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Identification of long-lived clusters and their link to slow dynamics in a model glass former
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First-order phase transition in a model glass former: coupling of local structure and dynamics
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The role of quench rate in colloidal gels
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Local structure of liquid-vapour interfaces
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The effect of attractions on the local structure of liquids and colloidal fluids
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A structural comparison of models of colloid-polymer mixtures
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Self-assembly of Colloidal Clusters
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Experience as a Short-Term JSPS Fellow
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A Structural Approach to Glassy Systems
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Molecular Simulation of Liquids and Gels
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The Reflectance of Silvery Fish Skins
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Timestep Error in Molecular Dynamics
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Comment on ‘Update of 40K and 226Ra and 232Th series gamma-to-dose conversion factors for soil’
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Topographic Effects on Ambient Dose Equivalent Rates from Radiocesium Fallout
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F-TRACE Project (15): Tool for calculating air dose rates from arbitrary radiocesium depth profiles and spatial distributions for Fukushima Prefecture
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Evaluation of ambient dose equivalent rates influenced by vertical and horizontal distribution of radioactive cesium in soil in Fukushima Prefecture
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Fields of View for Environmental Radioactivity
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Redistribution and export of contaminated sediment within eastern Fukushima Prefecture due to typhoon flooding
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Numerical study of sediment and 137Cs discharge out of reservoirs during various scale rainfall events
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Effect of Remediation Parameters on In-Air Ambient Dose Equivalent Rates when Remediating Open Sites with Radiocesium Contaminated Soil
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Coupling the advection-dispersion equation with fully kinetic reversible/irreversible sorption terms to model radiocesium soil profiles in Fukushima Prefecture
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Photon Adjoint Mode in PHITS
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Abstract
Using two detectors concurrently to monitor ambient dose equivalent rates in vehicle surveys of radiocesium contaminated land
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Continuous energy adjoint transport for photons in PHITS
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Evaluation of sediment and 137Cs redistribution in the Oginosawa River catchment near the Fukushima Dai-ichi Nuclear Power Plant using integrated watershed modeling
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Applicability of Kd for modelling dissolved 137Cs concentrations in Fukushima river water: Case study of the upstream Ota River
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Modelling the Effect of Mechanical Remediation on Dose Rates Above Radiocesium Contaminated Land
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Advancement of airborne radiation measurement technology: (2) Simulations of unmanned helicopter and LaBr3(Ce) detector used for estimating radiocesium distribution in soil
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Abstract
Simulation study of the effects of buildings, trees and paved surfaces on ambient dose equivalent rates outdoors at three suburban sites near Fukushima Dai-ichi
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Numerical study of transport pathways of 137Cs from forests to freshwater fish living in mountain streams in Fukushima, Japan
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PHITS Models for Ambient Dose Equivalent Rates in Fukushima’s Radiocesium Contaminated Forests
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Abstract
Monte Carlo radiation transport modelling of the current-biased kinetic inductance detector
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Kinetic inductance neutron detector operated at near critical temperature
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Homogeneity of neutron transmission imaging over a large sensitive area with a four-channel superconducting detector
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Simulation analysis of the Compton-to-peak method for quantifying radiocesium deposition quantities
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Calculations for ambient dose equivalent rates in nine forests in eastern Japan from 134Cs and 137Cs radioactivity measurements
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Development of the radioactivedecay Python package for radioactive decay calculations
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Abstract
Practical tests of neutron transmission imaging with a superconducting kinetic-inductance sensor
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radioactivedecay A Python package for radioactive decay calculations
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Narrow-area Bragg-edge transmission of iron samples using superconducting neutron sensor
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Urban factors and mental health symptoms in children of the Tokyo Early Adolescence Survey; impact of proximity to railway stations
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